Business Hub
← All insights
Fix & rescue

Annual Report Not Filed, What to Do Before Fines and Deletion from the Register Knock on the Door?

Every Estonian company must file an annual report, even if it has had no business activity during the financial year.

Sulev Pikker
Sulev Pikker · Founding Partner, Business Hub
With Estonian entrepreneurs since 1991
Updated September 3, 2026 · 3 min read

Every Estonian company must file an annual report, even if it has had no business activity during the financial year.

If the report is not submitted by the deadline, nothing visible may happen at first. This often creates the false impression that the issue will resolve itself. In reality, the Commercial Register follows a structured procedure, and every month of delay may increase both costs and risks.

The good news is that, in most cases, the situation can still be resolved successfully even if the report has been overdue for a considerable period.

What happens after the deadline?

For most companies, the deadline for submitting their annual report is June 30. This is because most of them have registered their financial year as January 1 to December 31, that is, a calendar year.

Once the deadline has passed, the process usually develops as follows:

1. Silence

For the first few weeks, nothing may appear to happen. This does not mean the register is ignoring the matter; compliance checks are carried out gradually.

2. Warning

The Commercial Register issues an official warning notice granting a new deadline for submitting the annual report. Failure to respond may lead to a warning of coercive fines.

3. Fines

If the warning is ignored, the register may impose a coercive fine. Fines may be imposed on both the company and its management board members, and may be repeated until the report is filed.

Paying the fine does not remove the obligation to submit the annual report.

4. Deletion

If the company continues to fail to submit its annual report, deregistration proceedings may begin. Although this is the final stage, it is far from uncommon, with thousands of companies removed from the register each year.

What does delaying really cost?

The longer the issue remains unresolved, the more expensive it becomes.

Costs may include:

  • preparing overdue annual reports;
  • imposed fines;
  • possible tax interest;
  • company restoration costs if the company has already been removed from the register.

In practice, resolving a problem that has accumulated over several years is often many times more expensive than acting immediately after the deadline.

In addition, public register warnings and fines remain visible and may negatively affect how banks, payment service providers, and business partners assess the company.

What if several annual reports are missing?

It is entirely possible to submit reports for multiple years.

The key is to prepare and submit them in the correct chronological order, because each year's report is based on the previous year's figures.

Even if some accounting records are missing, they can often be reconstructed using bank statements and other available documentation.

For inactive years, a zero-activity annual report is often sufficient.

When can you handle it yourself?

You can usually submit the report yourself if:

  • only one financial year is missing;
  • the company had no activity or only very simple transactions;
  • no warnings or fines have yet been issued;
  • you are able to sign documents digitally.

In such cases, resolving the issue is generally straightforward.

When should you consult a specialist?

Professional assistance is recommended if:

  • several annual reports are overdue;
  • you have received a warning or fine from the register;
  • the company has negative equity;
  • accounting records are incomplete;
  • the company has tax debts;
  • the company is subject to deregistration proceedings or has already been removed from the register.

In these situations, it is important to proceed in the correct order to avoid creating additional problems.

What should you do today?

Has the deadline only recently passed?

Submit the report as soon as possible.

Have you received a warning from the register?

Follow the deadline stated in the notice and submit the report before it expires.

Is the company already in deregistration proceedings or removed from the register?

Act immediately. The sooner you start resolving the issue, the greater the chances of preserving or restoring the company.

Or get my annual reports back on track.

Frequently asked questions

Does an inactive company still have to file an annual report?
Yes. Even an inactive company must submit an annual report. In most cases, a zero-activity report is sufficient.
Will the fine be cancelled after I submit the report?
Not automatically. A fine that has already been imposed generally remains in force, although filing the report stops further enforcement measures.
Can a company be removed from the register for failing to file an annual report?
Yes. If the company ignores the register's warnings, deregistration proceedings may be initiated.
I no longer have my accounting records. Is the situation hopeless?
No. The necessary information can often be reconstructed from bank statements and other available documents.

Not sure what your case needs? Ask in a free 15-minute call.